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Mixed 2010/2013 Exchange Enviroment with Exchange Online cleanup question

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Greetings All,

This may get a little confusing so I will apologize now.

My company, Company A, has a mixed 2010/2013 on-prem environment. We had been using FOPE to filter our mail. About a year ago we acquired Company B who was on Office 365.  Our directives required Company B to send and receive as Company A from day 1 of the merger.  Company A had to remove companyA.com from FOPE and add it to Company B's O365 environment so that Company B could send and receive as Company A.  Company A has their mail sent to an on-prem filter and relays to Company B through O365.

Fast-forward 12 months and we have all of Company B's mailboxes in Company A's on-prem environment and we want to again use EOP to Filter our mail. I want to remove all remnants of company A and Company B from Company B's O365 environment so I can add to Company A's EOP environment.  Easy enough.  However, my questions has to do with some pieces I had to put in place to make it work originally. 

I had to add a federation trust with Microsoft and set-up Free/Busy Organizational relationships with Company B's O365 (and on-prem) environment.  It's easy enough to remove the trust and organization relationships if needed.  My questions are, 1) Is it necessary to remove them and/or does it hurt anything; and 2) Is there a specific order that needs to be followed?

I would like to remove them if not needed just to make it neater.  However, this is not an environment that tolerates outages.

Thanks in advance for any advice,

Jack


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